An interesting idea. Mine would be:
Stage 1:
1. Rokudantobi
2. Log Grip (Shorter track)
3. Balance Bridge (Sasuke 11)
4. Jumping Spider (Sasuke 18 version. Also, actual Spider walking section severely shortened.)
5. Bungee Bridge (Meh, why not?)
6. Soritatsu Kabe (Original version, but yet again, slightly shorter)
7. Tarzan Rope (Sasuke 10-12)
8. Rope Climb
Time limit: Something reasonably generous
Stage 2:
1. Narrow
2. Very Short Salmon Ladder (Only 3 rungs, not including the starting one. No large gap or stick slider)
3. Spider Walk (Sasuke 5 and 6)
4. Original Balance Tank
5. Delta Bridge
6. Wall Lift (This feels evil, but... Original version. However, walls are lighter)
Time Limit: Something fairly harsh. I want to see stage 2 timeouts.
Stage 3:
(Note: This is going to be evil. After Kunoichi 8, we need some balance)
1. Propeller Bars
2. EDIT: Arm Bike (I originally put Devils Steps. Not that it makes much difference)
3. Kudari Lamp Grasper
4. Ultimate Cliffhanger...
Just Kidding
4. Cliffhanger Drop Out (Sasuke 5-8)
5. Jumping Bars (Only 2 jumps), straight into:
6. Climbing Bars
7. Original Half-Pipe Attack (Yes, really. Women just can't beat this obstacle for some reason. So just to be evil, I left it right to the very end. Well, almost...)
8. Gliding Ring (The Pipe Slider would be an obstacle too far, so just to show a glimmer of mercy...)
Final Stage:
The Sasuke 22-24 final, but with a 55 second time limit.